SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Accumulibacter phosphatis clade IIA str. UW-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

792 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4523
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3620
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2519
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 221
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2221
Homeodomain-like Ribonuclease H-like 223
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1914
Nucleotide cyclase EAL domain-like 1814
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1814
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 175
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 164
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 164
PYP-like sensor domain (PAS domain) EAL domain-like 1511
Actin-like ATPase domain Actin-like ATPase domain 155
CheY-like C-terminal effector domain of the bipartite response regulators 151
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 153
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 146
Calcium ATPase, transduction domain A HAD-like 138
HAD-like Calcium ATPase, transmembrane domain M 138
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 138
CheY-like PYP-like sensor domain (PAS domain) 1211
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 125
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 127
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1211
GroES-like NAD(P)-binding Rossmann-fold domains 114
Homodimeric domain of signal transducing histidine kinase CheY-like 1110
TPR-like TPR-like 119
CheY-like Nucleotide cyclase 108
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 104
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 103
CheY-like Homeodomain-like 92
Thioredoxin-like GST C-terminal domain-like 92
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 94
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 94
HMA, heavy metal-associated domain HAD-like 85
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 86
Thiolase-like Thiolase-like 81
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 85
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 85
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
beta-Roll beta-Roll 77
Cytochrome c Cytochrome c 72
Phospholipase D/nuclease Phospholipase D/nuclease 74
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 75
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 74
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
DNA methylase specificity domain DNA methylase specificity domain 62
PreATP-grasp domain Rudiment single hybrid motif 62
Alpha-L RNA-binding motif Pseudouridine synthase 62
cAMP-binding domain-like "Winged helix" DNA-binding domain 61
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
PurM N-terminal domain-like PurM C-terminal domain-like 63
CheY-like EAL domain-like 65
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 65
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Triger factor/SurA peptide-binding domain-like FKBP-like 65
(Trans)glycosidases Glycosyl hydrolase domain 55
CBS-domain pair FAD-binding/transporter-associated domain-like 51
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases TPR-like 55
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
ACT-like ACT-like 53
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 53
ParB/Sulfiredoxin KorB DNA-binding domain-like 52
Translation proteins EF-G C-terminal domain-like 53
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
E set domains (Trans)glycosidases 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
Resolvase-like Homeodomain-like 41
HD-domain/PDEase-like Nucleotidyltransferase 42
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 41
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 41
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 42
Nucleotidyltransferase ACT-like 42
HD-domain/PDEase-like ACT-like 42
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 44
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
HD-domain/PDEase-like CheY-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 44
E set domains Glycosyl hydrolase domain 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
WD40 repeat-like WD40 repeat-like 44
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
GAF domain-like Homodimeric domain of signal transducing histidine kinase 43
HAMP domain-like PYP-like sensor domain (PAS domain) 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
Homeodomain-like Homeodomain-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
ClpP/crotonase ClpP/crotonase 31
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 33
Chaperone J-domain HSP40/DnaJ peptide-binding domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
alpha-helical ferredoxin Nucleotide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 32
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
HlyD-like secretion proteins HlyD-like secretion proteins 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 32
TPR-like Sec-C motif 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
alpha/beta-Hydrolases Cadherin-like 33
P-loop containing nucleoside triphosphate hydrolases C-type lectin-like 33
"Winged helix" DNA-binding domain GAF domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 33
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Trypsin-like serine proteases PDZ domain-like 33
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
Nucleotide cyclase HD-domain/PDEase-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
CheW-like CheY-like 32
beta-Roll Cadherin-like 33
SpoIIaa-like cAMP-binding domain-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
GAF domain-like HD-domain/PDEase-like 33
Cadherin-like Cadherin-like 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
Formyltransferase FMT C-terminal domain-like 32
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
PYP-like sensor domain (PAS domain) GAF domain-like 33
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 32
alpha/beta-Hydrolases beta-Roll 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
PDZ domain-like PDZ domain-like 33
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 33
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Nucleotide cyclase SMAD/FHA domain 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
L30e-like alpha/beta knot 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 22
Translation proteins ThrRS/AlaRS common domain 22
LeuD/IlvD-like Aconitase iron-sulfur domain 22
Protein kinase-like (PK-like) cAMP-binding domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
TGS-like ACT-like 21
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 21
PYP-like sensor domain (PAS domain) Hemerythrin-like 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
TGS-like Class II aaRS and biotin synthetases 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
DPP6 N-terminal domain-like Caspase-like 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Rudiment single hybrid motif Single hybrid motif 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
SMAD/FHA domain SMAD/FHA domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 21
Subtilisin-like Galactose-binding domain-like 22
HD-domain/PDEase-like TGS-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
RmlC-like cupins RmlC-like cupins 21
PreATP-grasp domain Single hybrid motif 21
HAMP domain-like Nucleotide cyclase 22
PEP carboxykinase N-terminal domain PEP carboxykinase-like 21
ThrRS/AlaRS common domain Class II aaRS ABD-related 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
TGS-like Class II aaRS ABD-related 21
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 21
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
Caspase-like C-type lectin-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Toll/Interleukin receptor TIR domain P-loop containing nucleoside triphosphate hydrolases 22
alpha-helical ferredoxin alpha-helical ferredoxin 22
Nucleotidyltransferase TGS-like 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 21
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 21
PDZ domain-like ClpP/crotonase 21
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
alpha/beta-Hydrolases alpha/beta-Hydrolases 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 21
TGS-like ThrRS/AlaRS common domain 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
E set domains E set domains 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
TPR-like C-terminal effector domain of the bipartite response regulators 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 21
HD-domain/PDEase-like HD-domain/PDEase-like 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Nucleotidyltransferase substrate binding subunit/domain ACT-like 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Trypsin-like serine proteases TPR-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Actin-like ATPase domain HD-domain/PDEase-like 21
HCP-like Lysozyme-like 21
HAMP domain-like CheY-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Single hybrid motif CoA-dependent acyltransferases 22
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Carbamate kinase-like ACT-like 11
cAMP-binding domain-like CBS-domain pair 11
EPT/RTPC-like EPT/RTPC-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Nudix Thiamin phosphate synthase 11
ACP-like Acetyl-CoA synthetase-like 11
Phase 1 flagellin Phase 1 flagellin 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
SMAD/FHA domain EAL domain-like 11
PP2C-like Protein kinase-like (PK-like) 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
EAL domain-like HD-domain/PDEase-like 11
Single hybrid motif Thiolase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
RuvA domain 2-like BRCT domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
beta-Roll CalX-like 11
Hemerythrin-like Homodimeric domain of signal transducing histidine kinase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Transmembrane di-heme cytochromes 4Fe-4S ferredoxins 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
EreA/ChaN-like PDZ domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CarD-like TRCF domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
GroES-like GroES-like 11
Nucleic acid-binding proteins TPR-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribbon-helix-helix ACT-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
4Fe-4S ferredoxins ADC-like 11
YrdC/RibB RibA-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
PIN domain-like PLP-dependent transferases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
MgtE N-terminal domain-like CBS-domain pair 11
FliG FliG 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Toll/Interleukin receptor TIR domain alpha/beta-Hydrolases 11
GAF domain-like Homeodomain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Thioredoxin-like Six-hairpin glycosidases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Translation proteins Translation proteins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Caspase-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
RuvA domain 2-like MCP/YpsA-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Translation proteins PRC-barrel domain 11
Hsp33 domain HSP33 redox switch-like 11
HD-domain/PDEase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PIN domain-like Ribonuclease H-like 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
TPR-like NTF2-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PYP-like sensor domain (PAS domain) Ribonuclease H-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Restriction endonuclease-like Pentapeptide repeat-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
LysM domain LysM domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Nucleotide cyclase Hemerythrin-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
GroES-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
GAF domain-like Nucleotide cyclase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
ARM repeat Nucleotide cyclase 11
Single hybrid motif Single hybrid motif 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
PurS-like PurM C-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PurS-like PurM N-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
S-adenosyl-L-methionine-dependent methyltransferases EAL domain-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Ribosomal protein L6 Ribosomal protein L6 11
Galactose-binding domain-like beta-Roll 11
Thiamin diphosphate-binding fold (THDP-binding) Single hybrid motif 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Chaperone J-domain Trypsin-like serine proteases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
ParB/Sulfiredoxin C-terminal domain of transcriptional repressors 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Lysozyme-like PGBD-like 11
SpoIIaa-like SpoIIaa-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Macro domain-like Zn-dependent exopeptidases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CheY-like TPR-like 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
(Trans)glycosidases (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
FKBP-like FKBP-like 11
Fic-like "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Pectin lyase-like Caspase-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Carbamate kinase-like PUA domain-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Protein kinase-like (PK-like) C-terminal domain of RNA polymerase alpha subunit 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Aldolase post-HMGL domain-like 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
P-loop containing nucleoside triphosphate hydrolases Sec-C motif 11
Class II aaRS and biotin synthetases GAD domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
MetI-like MetI-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Chorismate mutase II ACT-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain EAL domain-like 11
Metalloproteases ("zincins"), catalytic domain CalX-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
PPK N-terminal domain-like PHP14-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
P-loop containing nucleoside triphosphate hydrolases Pentapeptide repeat-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II OmpA-like 11
Putative DNA-binding domain Translation proteins 11
Nucleic acid-binding proteins BRCT domain 11
alpha/beta-Hydrolases Caspase-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
YgfB-like Sec-C motif 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ribonuclease H-like GIY-YIG endonuclease 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Formyltransferase ClpP/crotonase 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PYP-like sensor domain (PAS domain) GntR ligand-binding domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Transmembrane di-heme cytochromes 2Fe-2S ferredoxin-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Toll/Interleukin receptor TIR domain S-adenosyl-L-methionine-dependent methyltransferases 11
Sensory domain-like CheY-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
RuvA domain 2-like JAB1/MPN domain 11
CBS-domain pair MgtE membrane domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Pentapeptide repeat-like WD40 repeat-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Thioredoxin-like Thioredoxin-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
2Fe-2S ferredoxin-like ADC-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidylyl transferase tRNA-binding arm 11
DNA clamp DNA clamp 11
FAD-linked oxidoreductase ALDH-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
NAD(P)-binding Rossmann-fold domains CBS-domain pair 11
Protein kinase-like (PK-like) HD-domain/PDEase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
Lysozyme-like LysM domain 11
PurS-like FGAM synthase PurL, linker domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PhoU-like Phosphotyrosine protein phosphatases I 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
KorB DNA-binding domain-like C-terminal domain of transcriptional repressors 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
GroES-like CBS-domain pair 11
GAF domain-like EAL domain-like 11
ACT-like Formyltransferase 11
Multiheme cytochromes TPR-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Phospholipase D/nuclease SMAD/FHA domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Quinoprotein alcohol dehydrogenase-like 11
Transmembrane di-heme cytochromes Ferredoxin reductase-like, C-terminal NADP-linked domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Caspase-like HCP-like 11
Acyl-CoA N-acyltransferases (Nat) beta-carbonic anhydrase, cab 11
YVTN repeat-like/Quinoprotein amine dehydrogenase beta-Roll 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Protein kinase-like (PK-like) GAF domain-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
TATA-box binding protein-like DNA-glycosylase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
CheY-like CheY-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
TK C-terminal domain-like Single hybrid motif 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Periplasmic binding protein-like II EAL domain-like 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
GAF domain-like EspE N-terminal domain-like 11
DPP6 N-terminal domain-like Quinoprotein alcohol dehydrogenase-like 11
Bacterial muramidases Lysozyme-like 11
TPR-like HCP-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
GroEL-intermediate domain like GroEL apical domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Hemerythrin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Quinoprotein alcohol dehydrogenase-like Caspase-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Pseudouridine synthase PUA domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
ARM repeat S-adenosyl-L-methionine-dependent methyltransferases 11
DNA primase core DNA primase DnaG, C-terminal domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Thioredoxin-like Nqo1 middle domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
PheT/TilS domain Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
TK C-terminal domain-like Thiolase-like 11
DHS-like NAD/FAD-binding domain Trypsin-like serine proteases 11
FAD/NAD(P)-binding domain PurM C-terminal domain-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Methylesterase CheB, C-terminal domain EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Ankyrin repeat 11
Caspase-like Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like HAD-like 11
Hemerythrin-like CheY-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Class I glutamine amidotransferase-like Homeodomain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FAD/NAD(P)-binding domain PurM N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Periplasmic binding protein-like II GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PIN domain-like DNA/RNA polymerases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Methylesterase CheB, C-terminal domain Nucleotide cyclase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Transmembrane di-heme cytochromes Riboflavin synthase domain-like 11
Phosphofructokinase Phosphofructokinase 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
PLP-dependent transferases PLP-dependent transferases 11
Thiamin diphosphate-binding fold (THDP-binding) Thiolase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
RNase III domain-like dsRNA-binding domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Ferritin-like Calcium ATPase, transduction domain A 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide cyclase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Restriction endonuclease-like WD40 repeat-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Subtilisin-like beta-Roll 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 11
Trypsin-like serine proteases HCP-like 11
Periplasmic binding protein-like II ACT-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
FMT C-terminal domain-like ClpP/crotonase 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases LexA/Signal peptidase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
YajQ-like YajQ-like 11
DNA-glycosylase Nudix 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
FMN-binding split barrel Riboflavin synthase domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Homeodomain-like DNA-glycosylase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Formyltransferase Glycoside hydrolase/deacetylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase GntR ligand-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
DPP6 N-terminal domain-like WD40 repeat-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Homeodomain-like TATA-box binding protein-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
HCP-like HCP-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Cupredoxins Cytochrome c 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
HAMP domain-like EAL domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
PUA domain-like alpha/beta knot 11
PreATP-grasp domain PreATP-grasp domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
PHP14-like Phospholipase D/nuclease 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
WD40 repeat-like Caspase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Resolvase-like Putative DNA-binding domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Toll/Interleukin receptor TIR domain C-type lectin-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
MFS general substrate transporter MFS general substrate transporter 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Phosphoglycerate mutase-like Nudix 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]