SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Polaromonas naphthalenivorans CJ2

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

701 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 511
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5128
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2615
CheY-like C-terminal effector domain of the bipartite response regulators 253
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2218
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2117
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 203
Actin-like ATPase domain Actin-like ATPase domain 196
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 195
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1814
Homodimeric domain of signal transducing histidine kinase CheY-like 1713
Thioredoxin-like GST C-terminal domain-like 172
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 169
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 158
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 158
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 158
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 158
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 144
Cytochrome c Cytochrome c 145
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1212
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 125
GroES-like NAD(P)-binding Rossmann-fold domains 122
Thiolase-like Thiolase-like 121
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 125
cAMP-binding domain-like "Winged helix" DNA-binding domain 122
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 127
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 125
Calcium ATPase, transduction domain A HAD-like 117
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 117
HAD-like Calcium ATPase, transmembrane domain M 117
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 101
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 103
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
ParB/Sulfiredoxin KorB DNA-binding domain-like 101
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 96
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 99
P-loop containing nucleoside triphosphate hydrolases MOP-like 81
"Winged helix" DNA-binding domain GAF domain-like 81
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 82
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 72
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
"Winged helix" DNA-binding domain PLP-dependent transferases 71
ISP domain Bet v1-like 72
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 72
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
GAF domain-like Homodimeric domain of signal transducing histidine kinase 77
PreATP-grasp domain Rudiment single hybrid motif 73
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
PurM N-terminal domain-like PurM C-terminal domain-like 62
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 65
PYP-like sensor domain (PAS domain) GAF domain-like 66
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 62
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 63
Alpha-L RNA-binding motif Pseudouridine synthase 62
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 64
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 65
Phospholipase D/nuclease Phospholipase D/nuclease 64
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 63
PYP-like sensor domain (PAS domain) CheY-like 66
Translation proteins EF-G C-terminal domain-like 53
CheY-like Homeodomain-like 52
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 54
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 51
HMA, heavy metal-associated domain HAD-like 54
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 54
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 42
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
Lysozyme-like beta-lactamase/transpeptidase-like 44
GAF domain-like Homeodomain-like 43
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
ACT-like ACT-like 44
Homeodomain-like Ribonuclease H-like 42
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Cupredoxins Cupredoxins 43
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Resolvase-like Homeodomain-like 31
GAF domain-like CheY-like 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
CheY-like CheY-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
ClpP/crotonase ClpP/crotonase 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
HD-domain/PDEase-like ACT-like 32
RuvA domain 2-like Nucleic acid-binding proteins 33
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
PreATP-grasp domain Single hybrid motif 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Nucleotidyltransferase HD-domain/PDEase-like 32
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Nucleotidyltransferase ACT-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Trypsin-like serine proteases PDZ domain-like 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
Rudiment single hybrid motif Single hybrid motif 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
L30e-like alpha/beta knot 21
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
Ferritin-like Calcium ATPase, transduction domain A 21
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 22
TGS-like ACT-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
PGBD-like L,D-transpeptidase catalytic domain-like 22
GroEL-intermediate domain like GroEL apical domain-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
(Trans)glycosidases Glycosyl hydrolase domain 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
Ferritin-like Calcium ATPase, transmembrane domain M 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
Nucleotidyltransferase TGS-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Ferritin-like HAD-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
Pentapeptide repeat-like Pentapeptide repeat-like 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Homeodomain-like SIS domain 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
DNA methylase specificity domain DNA methylase specificity domain 21
E set domains Glycosyl hydrolase domain 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Zinc beta-ribbon DNA primase core 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
RmlC-like cupins Homeodomain-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HAMP domain-like GAF domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
GroEL equatorial domain-like GroEL apical domain-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
PDZ domain-like PDZ domain-like 21
TPR-like TPR-like 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Homeodomain-like Homeodomain-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
alpha-helical ferredoxin Nucleotide-binding domain 22
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
HD-domain/PDEase-like TGS-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
E set domains (Trans)glycosidases 22
PLP-binding barrel Alanine racemase C-terminal domain-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Single hybrid motif CoA-dependent acyltransferases 22
Heme-dependent catalase-like Class I glutamine amidotransferase-like 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
HlyD-like secretion proteins HlyD-like secretion proteins 22
Galactose mutarotase-like E set domains 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins PRC-barrel domain 11
PurS-like Class I glutamine amidotransferase-like 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Aldolase post-HMGL domain-like 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
TGS-like Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribosomal protein L6 Ribosomal protein L6 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YgfB-like Sec-C motif 11
N-acetylmuramoyl-L-alanine amidase-like Caspase-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
RuvA domain 2-like JAB1/MPN domain 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
MOP-like MOP-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Pili subunits RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
CheW-like CheY-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
PurS-like PurM N-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Homeodomain-like DNA-glycosylase 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Homeodomain-like TATA-box binding protein-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
PPK N-terminal domain-like PHP14-like 11
Tex N-terminal region-like RuvA domain 2-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Macro domain-like Zn-dependent exopeptidases 11
YrdC/RibB RibA-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Globin-like Riboflavin synthase domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
DNA clamp DNA clamp 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Carbamate kinase-like ACT-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
PGBD-like Periplasmic binding protein-like II 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cyclophilin-like PH0987 N-terminal domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PurS-like PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
ClpP/crotonase NfeD domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Thioredoxin-like Six-hairpin glycosidases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PDZ domain-like ClpP/crotonase 11
Formyltransferase ClpP/crotonase 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
Nucleic acid-binding proteins GAD domain-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Sensory domain-like CheY-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Translation proteins Translation proteins 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
alpha/beta-Hydrolases Fibronectin type III 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
ACT-like Formyltransferase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Methylesterase CheB, C-terminal domain CheY-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nudix "Winged helix" DNA-binding domain 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Rudiment single hybrid motif Cyclophilin-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases (Phosphotyrosine protein) phosphatases II 11
Metalloproteases ("zincins"), catalytic domain Fucose-specific lectin 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Thioredoxin-like Thioredoxin-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotide cyclase SMAD/FHA domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Chorismate mutase II ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Class I glutamine amidotransferase-like Glycoside hydrolase/deacetylase 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Hsp33 domain HSP33 redox switch-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Protein kinase-like (PK-like) GAF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Sec63 N-terminal domain-like PHP domain-like 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
PurS-like FGAM synthase PurL, linker domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
SIS domain CBS-domain pair 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
RuvA domain 2-like RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
E set domains E set domains 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Cyclophilin-like Single hybrid motif 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Carbamate kinase-like PUA domain-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
YajQ-like YajQ-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Trigger factor ribosome-binding domain FKBP-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Nucleotidylyl transferase tRNA-binding arm 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Aldolase CoA-transferase family III (CaiB/BaiF) 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
FKBP-like FKBP-like 11
Nucleotidylyl transferase YegP-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ribonuclease H-like RuvA domain 2-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
TGS-like ThrRS/AlaRS common domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Nucleotidyltransferase PHP domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
Periplasmic binding protein-like II ACT-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
Nucleotide cyclase EAL domain-like 11
DNA-glycosylase Nudix 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
CarD-like TRCF domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Homing endonucleases PFL-like glycyl radical enzymes 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain MOP-like 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
GAF domain-like GAF domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Putative DNA-binding domain Translation proteins 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nudix Metallo-hydrolase/oxidoreductase 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TATA-box binding protein-like DNA-glycosylase 11
CheY-like Nucleotide cyclase 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Diaminopimelate epimerase-like Periplasmic binding protein-like II 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
UraD-Like Zn-dependent exopeptidases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
OMPA-like OmpA-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
TGS-like Class II aaRS ABD-related 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
PLP-dependent transferases PLP-dependent transferases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
HCP-like HCP-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotidylyl transferase Nudix 11
Formyltransferase FMT C-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PUA domain-like alpha/beta knot 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Class II aaRS and biotin synthetases Translation proteins 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
MetI-like MetI-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
SGNH hydrolase SGNH hydrolase 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
YjeF N-terminal domain-like Ribokinase-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase Ankyrin repeat 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Ribonuclease H-like Chaperone J-domain 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
NTF2-like FAD/NAD(P)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
SMAD/FHA domain SMAD/FHA domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PP2C-like Protein kinase-like (PK-like) 11
Chorismate mutase II Periplasmic binding protein-like II 11
Thioredoxin-like Nqo1 middle domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PHP14-like Phospholipase D/nuclease 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
FAD-linked oxidoreductase ALDH-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
cAMP-binding domain-like CBS-domain pair 11
PreATP-grasp domain Cyclophilin-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Thioredoxin-like TPR-like 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PGBD-like PGBD-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Activating enzymes of the ubiquitin-like proteins JAB1/MPN domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PRTase-like EreA/ChaN-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
RuvA domain 2-like MCP/YpsA-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
HCP-like TPR-like 11
PIN domain-like DNA/RNA polymerases 11
Subtilisin-like Trypsin-like serine proteases 11
RNase III domain-like dsRNA-binding domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PIN domain-like Ribonuclease H-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Single hybrid motif Single hybrid motif 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
GroES-like GroES-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Cyclophilin-like Cyclophilin-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]